Package: viewpoly 0.4.2

Cristiane Taniguti

viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Authors:Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]

viewpoly_0.4.2.tar.gz
viewpoly_0.4.2.zip(r-4.7)viewpoly_0.4.2.zip(r-4.6)viewpoly_0.4.2.zip(r-4.5)
viewpoly_0.4.2.tgz(r-4.6-any)viewpoly_0.4.2.tgz(r-4.5-any)
viewpoly_0.4.2.tar.gz(r-4.7-any)viewpoly_0.4.2.tar.gz(r-4.6-any)
viewpoly_0.4.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
viewpoly/json (API)
NEWS

# Install 'viewpoly' in R:
install.packages('viewpoly', repos = c('https://mmollina.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mmollina/viewpoly/issues

On CRAN:

Conda:

4.15 score 7 stars 2 scripts 204 downloads 1 exports 147 dependencies

Last updated from:9694de1049. Checks:2 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR175
source / vignettesOK230
linux-release-x86_64ERROR190
macos-release-arm64OK287
macos-oldrel-arm64OK435
windows-develOK198
windows-releaseOK197
windows-oldrelOK177
wasm-releaseOK164

Exports:run_app

Dependencies:abindaskpassattemptbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecommonmarkconfigcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDerivdigestdoBydplyrDTevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsggnewscaleggplot2ggpubrggrepelggsciggsignifgluegolemgridExtragtableherehidecanhighrhmshtmltoolshtmlwidgetshttpuvhttridsisobandJBrowseRjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbkrtestpillarpkgconfigplotlyplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreactRreadrreformulasreshape2rlangrmarkdownrprojrootrstatixS7sassscalesshinyshinydashboardshinyjsshinythemesshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytextzdburcautf8uuidvctrsviridisviridisLitevroomwithrxfunxtableyamlzoo