Package: viewpoly 0.4.2

Cristiane Taniguti

viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Authors:Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]

viewpoly_0.4.2.tar.gz
viewpoly_0.4.2.zip(r-4.7)viewpoly_0.4.2.zip(r-4.6)viewpoly_0.4.2.zip(r-4.5)
viewpoly_0.4.2.tgz(r-4.6-any)viewpoly_0.4.2.tgz(r-4.5-any)
viewpoly_0.4.2.tar.gz(r-4.7-any)viewpoly_0.4.2.tar.gz(r-4.6-any)
viewpoly_0.4.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
viewpoly/json (API)

# Install 'viewpoly' in R:
install.packages('viewpoly', repos = c('https://mmollina.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mmollina/viewpoly/issues

On CRAN:

Conda:

4.15 score 7 stars 2 scripts 205 downloads 1 exports 147 dependencies

Last updated from:9694de1049. Checks:2 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR190
source / vignettesOK219
linux-release-x86_64ERROR172
macos-release-arm64OK166
macos-oldrel-arm64OK300
windows-develOK174
windows-releaseOK166
windows-oldrelOK172
wasm-releaseOK160

Exports:run_app

Dependencies:abindaskpassattemptbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprcolorspacecommonmarkconfigcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDerivdigestdoBydplyrDTevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsggnewscaleggplot2ggpubrggrepelggsciggsignifgluegolemgridExtragtableherehidecanhighrhmshtmltoolshtmlwidgetshttpuvhttridsisobandJBrowseRjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivopensslotelpbkrtestpillarpkgconfigplotlyplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreactRreadrreformulasreshape2rlangrmarkdownrprojrootrstatixS7sassscalesshinyshinydashboardshinyjsshinythemesshinyWidgetssourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytextzdburcautf8uuidvctrsviridisviridisLitevroomwithrxfunxtableyamlzoo