Package: viewpoly
Title: A Shiny App to Visualize Genetic Maps and QTL Analysis in
        Polyploid Species
Version: 0.4.2
Authors@R: c(
           person(given = "Cristiane",
                  family = "Taniguti",
                  role = c("aut", "cre"),
                  email = "chtaniguti@tamu.edu"),
           person(given = "Gabriel",
                  family = "de Siqueira Gesteira",
                  role = c("aut"),
                  email = "gdesiqu@ncsu.edu"),
           person(given = "Jeekin",
                  family = "Lau",
                  role = c("aut")),
           person(given = "Olivia",
                  family = "Angelin-Bonnet",
                  role = c("aut")),
           person(given = "Susan",
                  family = "Thomson",
                  role = c("ctb")),
           person(given = "Guilherme",
                  family = "da Silva Pereira",
                  role = c("ctb")),
           person(given = "David",
                  family = "Byrne",
                  role = c("ctb")),
           person(given = "Zhao-Bang",
                  family = "Zeng",
                  role = c("ctb")),   
           person(given = "Oscar",
                  family = "Riera-Lizarazu",
                  role = c("ctb")),
           person(given = "Marcelo",
                  family = "Mollinari",
                  role = c("aut"),
                  email = "mmollin@ncsu.edu")
           )
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Description: Provides a graphical user interface to integrate,
        visualize and explore results from linkage and quantitative
        trait loci analysis, together with genomic information for
        autopolyploid species. The app is meant for interactive use and
        allows users to optionally upload different sources of
        information, including gene annotation and alignment files,
        enabling the exploitation and search for candidate genes in a
        genome browser. In its current version, 'VIEWpoly' supports
        inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly',
        'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.
License: GPL (>= 3)
Depends: R (>= 4.1.0)
Imports: shiny (>= 1.6.0), shinyjs, shinythemes, shinyWidgets,
        shinydashboard, config (>= 0.3.1), golem (>= 0.3.1), JBrowseR,
        dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind,
        reshape2, markdown, stats, hidecan, purrr
URL: https://github.com/mmollina/viewpoly
BugReports: https://github.com/mmollina/viewpoly/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), shinytest, rlang, pkgload, vdiffr
Config/testthat/edition: 3
Language: en-US
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://mmollina.r-universe.dev
Date/Publication: 2025-10-13 19:49:39 UTC
RemoteUrl: https://github.com/mmollina/viewpoly
RemoteRef: HEAD
RemoteSha: 9694de1049a2da9214ba431f06d589712cd0bafb
NeedsCompilation: no
Packaged: 2026-06-11 07:50:50 UTC; root
Author: Cristiane Taniguti [aut, cre],
  Gabriel de Siqueira Gesteira [aut],
  Jeekin Lau [aut],
  Olivia Angelin-Bonnet [aut],
  Susan Thomson [ctb],
  Guilherme da Silva Pereira [ctb],
  David Byrne [ctb],
  Zhao-Bang Zeng [ctb],
  Oscar Riera-Lizarazu [ctb],
  Marcelo Mollinari [aut]